Bartosz Czech
About me
Position: PhD Student
Contact: bartosz.czech@upwr.edu.pl
Consultations: Google Meet platform – write me an e-mail with the proposed date and hour
Department of Genetics
The Faculty of Biology and Animal Science
Wroclaw University of Environmental and Life Sciences
Research interests
My research interests revolve around bioinformatics and computational biology in general. My research focuses on the analysis of Next Generation Sequencing data, especially whole-genome sequencing (WGS) data applied in animal science and whole transcriptome sequencing (RNA-seq) data applied in oncology. Current research focuses on the impact of changes in cattle’s microbiome on the heat stress response using 16S rRNA (Microbiome-seq). My doctoral research is focused on the integration of multi-omics data using a machine learning approach.
Member of the Polish Bioinformatics Society (PTBI) and the European Federation of Animal Science (EAAP).
Teaching
- Data analysis from the next-generation sequencing technology (Analiza danych pochodzących z sekwencjonowania następnej generacji)
- Data analysis (Analiza danych)
- Bioinformatics seminar (Seminarium bioinformatyczne)
- The latest developments in bioinformatics (Najnowsze osiągnięcia w bioinformatyce)
- Mathematical statistics (Statystyka matematyczna)
Publications
- Suchocki, T., Czech, B., Dunislawska, A., Slawinska, A., Derebecka, N., Wesoly, J., Siwek, M., & Szyda, J. SNP prioritization in targeted sequencing data associated with humoral immune responses in chicken. Poultry Science, 2021
- M. Mielczarek, B. Czech, J. Stańczyk, J. Szyda, B. Guldbrandtsen. Extraordinary Command Line: Basic Data Editing Tools for Biologists Dealing with Sequence Data. The Open Bioinformatics Journal, 2020
- Kotlarz, K., Mielczarek, M., Suchocki, T., Czech, B., Guldbrandtsen, B., and Szyda, J.
The application of deep learning for the classification of correct and incorrect SNP genotypes from whole-genome DNA sequencing pipelines.
Journal of Applied Genetics, 2020 - B. Czech, B. Guldbrandtsen, J. Szyda.
Patterns of DNA variation between the autosomes, the X chromosome and the Y chromosome in Bos taurus genome.
Scientific Reports, 2020 - B. Czech, M. Frąszczak, M. Mielczarek, and J. Szyda.
Identification and annotation of breed-specific single nucleotide polymorphisms in Bos taurus genomes.
PLoS ONE, 2018
Education
2019 – current: PhD, Biological Sciences.
Wrocław University of Environmental and Life Sciences
2017 – 2019: MScEng, Bioinformatics: biostatistics and bioinformatics programming.
Wrocław University of Environmental and Life Sciences
Thesis: Patterns of DNA variation between the autosomes, the X chromosome and the Y chromosome in Bos taurus genome
Supervisors: prof. dr hab. inż. Joanna Szyda, prof. Bernt Guldbrandtsen
2014 – 2017: BSc, Bioinformatics.
Wrocław University of Environmental and Life Sciences
Thesis: The influence of the presence of null alleles on the results of the genetic diversity analysis of red foxes population (Vulpes vulpes) in Poland.
Supervisor: dr inż. Anna Mucha