Seminar archive
You can check out what we talked about in the last semester.
Winter semester 2022/2023:
- 08.02.2023 – Joanna Szyda | Jakub Liu | Krzysztof Kotlarz – The Festival of Genomics & Biodata 2022 – summary
- 01.02.2023 – No seminar
- 25.01.2023 – No seminar
- 18.01.2023 – Małgorzata Wnętrzak – Study of the optimality of the genetic code
- 11.01.2023 – Bartosz Czech – Diving into genomic regions associated with heat stress in cattle
- 04.01.2023 – Dawid Słomian – Over the hills and far away – multidimensional likelihood optimization with PCG
- 28.12.2022 – 🎄
- 21.12.2022 – Krzysztof Kotlarz – NextFlow: parallel and scalable computational pipelines pt. 2
- 14.12.2022 – Krzysztof Kotlarz – NextFlow: parallel and scalable computational pipelines pt. 1
- 07.12.2022 – Michalina Jakimowicz – PTBI Aspects II: Binary classification under partial observability of class variable
- 30.11.2022 – Joanna Szyda – OpenMP – course at HPC Vienna with code examples pt.2
- 23.11.2022 – Joanna Szyda – OpenMP – course at HPC Vienna with code examples pt.1
- 16.11.2022 – Tomasz Suchocki – Cow fertility – Data editing + variance components analysis
- 08.11.2022 – Joanna Szyda – Statistical modelling of complex phenotypes and genotypes in livestock
- 25.10.2022 – Jakub Liu – PTBI 2022 Aspects
- 18.10.2022 – Dawid Słomian – Single-step SNPBLUP for stature in the Polish Holstein population
- 11.10.2022 – Krzysztof Kotlarz – EAAP 2022 Aspects
- 04.10.2022 – Piotr Hajduk – Gene expression analysis in Rattus norvegicus under heat stress
Summer semester 2021/2022:
- 05.08.2022 – Bartosz Czech – Bacterial and k-mer GWAS
- 22.07.2022 – Joanna Szyda – WCGALP Aspects: follow-up
- 15.07.2022 – Joanna Szyda | Krzysztof Kotlarz | Dawid Słomian – WCGALP Aspects
- 🌞Holidays!🌞
- 01.07.2022 – Dr Zengting Liu – Using a single-step SNP BLUP maternal-effect model for calving trait genomic evaluation in German Holsteins
- 24.06.2022 – Dr Zengting Liu – Application of a single-step SNP BLUP random regression model to test-day yields and somatic cell scores in German Holsteins
- 17.06.2022 – No Seminar
- 10.06.2022 – Paweł Sztromwasser – Production infrastructure for processing and analysis of petabytes of sequencing data
- 03.06.2022 – Krzysztof Kotlarz – Classification of cows into mastitis prone and mastitis resistant using a deep learning approach with model regularisation
- 27.05.2022 – Tomasz Suchocki – Improving genetic evaluation using a multitrait single-step genomic model for ability to resume cycling after calving
- 20.05.2022 – Organisational meeting (Conferneces)
- 13.05.2022 – Svitlana Tretiak (Ghent University) – Development of blood plasma biomarkers for the efficacy evaluation of feed additives to improve intestinal health in broiler chickens
- 29.04.2022 – Michalina Jakimowicz – Genome-wide genomic and functional association study for workability and calving traits in Holstein cattle
- 22.04.2022 – Bartosz Czech – The complete sequence of a human genome
- 15.04.2022 – No Seminar
- 08.04.2022 – Tomasz Suchocki – Single step genomic evaluation for female fertility in Nordic Red
- 01.04.2022 – Dawid Słomian – Genetic Diversity in the Italian Holstein Dairy Cattle Based on Pedigree and SNP Data Prior and After Genomic Selection
- 25.03.2022 – Nagarajan S – Details behind AI/ML algorithms
- 18.03.2022 – Krzysztof Kotlarz – Introduction to Graph Neural Networks and Their Current Applications in Bioinformatics
- 11.03.2022 – Joanna Szyda – Missing k-mers + Organizational meeting
Winter semester 2021/2022:
- 02.02.2022 – Joanna Szyda – Geostatistical analysis of COVID-19
- 27.01.2022 – Magdalena Frąszczak – Shapley Value in mathematical details
- 20.01.2022 – Bartosz Czech – Weighted gene co-expression network analysis
- 13.01.2022 – Video session: prof. Michael J. Pyrcz – Machine Learning: Shapley Value
- 16.12.2021 – Magda Mielczarek – “Evaluating nanopore sequencing data processing pipelines for structural variation identification” paper
- 09.12.2021 – Dawid Słomian – Single-step models using the MiXBLUP software
- 02.12.2021 – Joanna Szyda – Journal club – Paper 1 | Paper 2 | Paper 3
- 25.11.2021 – NGSchool – Retrogenes – why to bother – Izabela Makałowska
- 18.11.2021 – Krzysztof Kotlarz – LMM in the application of Cow’s KEGGs and its decimal precision in the estimation process
- 11.11.2021 – No Seminar
- 04.11.2021 – Nagarajan S – Integrative analysis of single-cell multi-omics data using deep learning | GANs for Genomics | UMAP for Single Cell Omics Integration UMAP for Single Cell Omics Integration
- 28.10.2021 – Tomasz Suchocki – Burden of multimorbidity in a Polish cohort of ambulatory and hospitalized heart failure patients from two large European registry programs: prognostic implications
- 21.10.2021 – Joanna Szyda – Gene co-expression networks | Clipper: p-value-free FDR control on high-throughput data
- 14.10.2021 – Organizational meeting
Summer semester 2020/2021:
- 28.06.2021 – Joanna Szyda
- 21.06.2021 – Krzysztof Kotlarz – Hyperparameter Tuning using Optuna
- 14.06.2021 – Michalina Jakimowicz about COVID data analysis
- 07.06.2021 – Anita Brzoza reviewing microbiome analyses based papers
- 31.05.2021 – Jakub Olszewski – Python Course (III)
- 24.05.2021 – Jakub Olszewski – Python Course (II)
- 17.05.2021 – Jakub Olszewski – Python Course (I)
- 10.05.2021 – Magda Mielczarek about DE in A. thaliana
- 03.05.2021 – no seminar
- 26.04.2021 – Bartosz Czech about technical aspects on microbiome analysis
- 19.04.2021 – Michalina Jakimowicz about Structural equation models used to describe biological relationship between microbiota and complex traits in cattle
- 12.04.2021 – Barbara Kosińska-Selbi – The effectiveness of PCR tests for SARs-CoV-2 detection
- 05.04.2021 – no seminar 🐰
- 29.03.2021 – Bartłomiej Hofman about lncRNAs in pigs
- 22.03.2021 – Krzysztof Kotlarz – Statistical models estimating the effects of heat stress on transcript expression in rat
- 15.03.2021 – Bartosz Czech – Interactions between the gut microbiome and host gene regulation in cystic fibrosis
- 08.03.2021 – Joanna Szyda about the COVID-19 project