SARS-COV2 variant calling and generation of the consensus genome

 

lectures start today (25th of October)
hybrid mode is available upon request to js

New one in THETA portfolio. AE published in NAR Genomics and Bioinformatics (Editor’s Choice!!!)

THETA students at the Symposium of the Polish Bioinformatic Society (PTBI) in Warsaw

Four students: Marek Sztuka, Klaudiusz Tomczyk, Patryk Mierzejewski, Jakub Liu were attending the annual PTBI Symposium, which was held in Warsaw during the days 11-13.09.2024.

Posters presented during the conference included:

  1. Application of Neural Network for Common Carp microbiome. Sztuka M., Jakimowicz, M., Kotlarz, K., Mielczarek, M., Naport-Rutkowski, Ł., Hajduk, P., Szyda J.
  2. Analysis of linkage disequilibrium for next generation sequencing data.
    Tomczyk K.,  Jerzykiewicz F.,  Szyda J.,  Mielczarek M., Dobosz P.,  Frąszczak M.
  3. Investigation of the temporal changes in brain activity based on functional Magnetic Resonance Imaging data.
    Mierzejewski P., Kotlarz K.,  Baran P., Borysewicz J., Brzezicha P.,  Duszczak D., Szyda J., Frąszczak M.

Presentation:

  1. A three-level modeling for identifying important predictor variables in genome-wide association studies suffering from p » n. Liu J., Słomian D.,  Kotlarz K., Dobosz P.,  Szyda J.

 

We are as cool as a cucumber

Genetics Days is an annual conference focused on the newest developments made in all scientific fields concerning genetics. Theta took the opportunity to present their studies. Look for more in the theta Conferences page 🙂

The Scientific Program is here 🙂

DS at The 75th EAAP Annual Meeting, Florence, Italy

D. Słomian, K. Żukowski, M. Skarwecka, K. Kotlarz, J.Szyda
Genome-wide association study for stature for Holstein cattle based on whole genome sequence, using a mixed linear model

THETA at 7th International Conference of Quantitative Genetics (ICQG 2024) on-site next week!

Check out our posters:
JS: Towards a biological interpretation of the effect of probiotic supplementation expressed by the microbiome composition of the fish gut microbiome
MJ: Influence of Effective Microorganism Supplementation on the Water and on Gut Microbiome of Common Carp
KK: Rank aggregation-based feature selection for comprehensive multi-breed cattle classification

Variant interpretation

Theta tries to find bioinfo solutions for a deep sea of ​​genetic variants. We took an “Enhancing variant interpretation: Obtaining answers from a vast universe of data” webinar given by Sophia.

Fertility traits

TS will have presentations for breeders regarding the single step evaluation for female fertility traits in dairy cattle. The presentation will be in Warsaw in headquarter of PFHBiPM.

Expanding

Finally some Biostat

Plan for the visit of our guest, Prof. Dr. Frank Konietschke from the Institute of Biometry and Clinical Epidemiology at the Charité Berlin

 

 

10.06 16:00 seminar – Theta group members presentations and discussions (Seminar room Institute of Genetics) hybrid

11.06 10:30 guest lecture The Max-t and Wilcoxon-Mann-Whitney test for high-dimensional Repeated Measures and multivariate Designs” (AB lecture hall) onsite

12.06 10:30 guest lecture “Mixed Models and Repeated Measures Designs” following discussions (Seminar room Institute of Genetics) hybrid

 

for seminar access please contact Marek Sztuka

for materials you can check our seminar page

archive...